### /usr/local/bin/dolphin-bin/STAR --runMode genomeGenerate --genomeDir /share/data/umw_biocore/genome_data/mouse/mm10/commondb/rmsk --genomeFastaFiles /share/data/umw_biocore/genome_data/mouse/mm10/commondb/rmsk/rmsk.fa --genomeSAindexNbases 10 --sjdbGTFfile /share/data/umw_biocore/genome_data/mouse/mm10/commondb/rmsk/rmsk.gtf versionGenome 20201 genomeFastaFiles /share/data/umw_biocore/genome_data/mouse/mm10/commondb/rmsk/rmsk.fa genomeSAindexNbases 10 genomeChrBinNbits 18 genomeSAsparseD 1 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile /share/data/umw_biocore/genome_data/mouse/mm10/commondb/rmsk/rmsk.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic