cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2 /share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin cellranger mkgtf (3.0.2) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Writing new genes GTF file (may take 10 minutes for a 1GB input GTF file)... ...done ------------------------------------------------------------ Sender: LSF System Subject: Job 7697267: in cluster Done Job was submitted from host by user in cluster at Sat Jul 13 13:08:32 2019. Job was executed on host(s) , in queue , as user in cluster at Sat Jul 13 13:08:35 2019. was used as the home directory. was used as the working directory. Started at Sat Jul 13 13:08:35 2019. Terminated at Sat Jul 13 13:10:30 2019. Results reported at Sat Jul 13 13:10:30 2019. Your job looked like: ------------------------------------------------------------ # LSBATCH: User input module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3 && cellranger mkgtf cuffmerge_v4.1.3.gtf cuffmerge_v4.1.3.validated.gtf ------------------------------------------------------------ Successfully completed. Resource usage summary: CPU time : 89.96 sec. Max Memory : 59 MB Average Memory : 51.12 MB Total Requested Memory : 20048.00 MB Delta Memory : 19989.00 MB Max Swap : - Max Processes : 5 Max Threads : 14 Run time : 114 sec. Turnaround time : 118 sec. The output (if any) is above this job summary.