cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2
/share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin
cellranger mkref (3.0.2)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
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Jul 13 13:16:07 ..... Started STAR run
Jul 13 13:16:07 ... Starting to generate Genome files
Jul 13 13:16:47 ... starting to sort  Suffix Array. This may take a long time...
Jul 13 13:16:52 ... sorting Suffix Array chunks and saving them to disk...
Jul 13 13:38:52 ... loading chunks from disk, packing SA...
Jul 13 13:39:22 ... Finished generating suffix array
Jul 13 13:39:22 ... Generating Suffix Array index
Jul 13 13:41:03 ... Completed Suffix Array index
Jul 13 13:41:03 ..... Processing annotations GTF
Jul 13 13:41:14 ..... Inserting junctions into the genome indices
Jul 13 13:47:32 ... writing Genome to disk ...
Jul 13 13:47:37 ... writing Suffix Array to disk ...
Jul 13 13:47:56 ... writing SAindex to disk
Jul 13 13:48:00 ..... Finished successfully
Creating new reference folder at /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3/GRCz11_v4.1.3
...done

Writing genome FASTA file into reference folder...
...done

Computing hash of genome FASTA file...
...done

Indexing genome FASTA file...
...done

Writing genes GTF file into reference folder...
...done

Computing hash of genes GTF file...
...done

Writing genes index file into reference folder (may take over 10 minutes for a 3Gb genome)...
...done

Writing genome metadata JSON file into reference folder...
...done

Generating STAR genome index (may take over 8 core hours for a 3Gb genome)...
...done.

>>> Reference successfully created! <<<

You can now specify this reference on the command line:
cellranger --transcriptome=/share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3/GRCz11_v4.1.3 ...

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Sender: LSF System <lsfadmin@c40b14>
Subject: Job 7697268: <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3 && cellranger mkref --genome=GRCz11_v4.1.3 --fasta=danRer11.primary.fa --genes=cuffmerge_v4.1.3.validated.gtf --ref-version=1.0.0> in cluster <umghpcc> Done

Job <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3 && cellranger mkref --genome=GRCz11_v4.1.3 --fasta=danRer11.primary.fa --genes=cuffmerge_v4.1.3.validated.gtf --ref-version=1.0.0> was submitted from host <ghpcc06> by user <gxy11w> in cluster <umghpcc> at Sat Jul 13 13:13:23 2019.
Job was executed on host(s) <c40b14>, in queue <long>, as user <gxy11w> in cluster <umghpcc> at Sat Jul 13 13:13:26 2019.
</home/gxy11w> was used as the home directory.
</share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3> was used as the working directory.
Started at Sat Jul 13 13:13:26 2019.
Terminated at Sat Jul 13 13:48:04 2019.
Results reported at Sat Jul 13 13:48:04 2019.

Your job looked like:

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# LSBATCH: User input
module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.1.3 && cellranger mkref --genome=GRCz11_v4.1.3 --fasta=danRer11.primary.fa --genes=cuffmerge_v4.1.3.validated.gtf --ref-version=1.0.0
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time :                                   2011.32 sec.
    Max Memory :                                 18667 MB
    Average Memory :                             11190.55 MB
    Total Requested Memory :                     20048.00 MB
    Delta Memory :                               1381.00 MB
    Max Swap :                                   -
    Max Processes :                              6
    Max Threads :                                15
    Run time :                                   2077 sec.
    Turnaround time :                            2081 sec.

The output (if any) is above this job summary.