cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2
/share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin
cellranger mkgtf (3.0.2)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------

Input file does not exist: /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1/V4.3.gtf

------------------------------------------------------------
Sender: LSF System <lsfadmin@c38b16>
Subject: Job 6839891: <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf V4.3.gtf V4.3.validated.gtf> in cluster <umghpcc> Exited

Job <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf V4.3.gtf V4.3.validated.gtf> was submitted from host <ghpcc06> by user <gxy11w> in cluster <umghpcc> at Tue May 12 10:27:23 2020
Job was executed on host(s) <c38b16>, in queue <long>, as user <gxy11w> in cluster <umghpcc> at Tue May 12 10:27:24 2020
</home/gxy11w> was used as the home directory.
</share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3> was used as the working directory.
Started at Tue May 12 10:27:24 2020
Terminated at Tue May 12 10:27:51 2020
Results reported at Tue May 12 10:27:51 2020

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf V4.3.gtf V4.3.validated.gtf
------------------------------------------------------------

Exited with exit code 1.

Resource usage summary:

    CPU time :                                   1.81 sec.
    Max Memory :                                 34 MB
    Average Memory :                             27.25 MB
    Total Requested Memory :                     20048.00 MB
    Delta Memory :                               20014.00 MB
    Max Swap :                                   -
    Max Processes :                              5
    Max Threads :                                6
    Run time :                                   31 sec.
    Turnaround time :                            28 sec.

The output (if any) is above this job summary.

cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2
/share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin
cellranger mkgtf (3.0.2)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------

Writing new genes GTF file (may take 10 minutes for a 1GB input GTF file)...
...done


------------------------------------------------------------
Sender: LSF System <lsfadmin@c38b16>
Subject: Job 6839902: <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3 && cellranger mkgtf V4.3.gtf V4.3.validated.gtf> in cluster <umghpcc> Done

Job <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3 && cellranger mkgtf V4.3.gtf V4.3.validated.gtf> was submitted from host <ghpcc06> by user <gxy11w> in cluster <umghpcc> at Tue May 12 10:28:37 2020
Job was executed on host(s) <c38b16>, in queue <long>, as user <gxy11w> in cluster <umghpcc> at Tue May 12 10:28:37 2020
</home/gxy11w> was used as the home directory.
</share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3> was used as the working directory.
Started at Tue May 12 10:28:37 2020
Terminated at Tue May 12 10:29:08 2020
Results reported at Tue May 12 10:29:08 2020

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3 && cellranger mkgtf V4.3.gtf V4.3.validated.gtf
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time :                                   25.35 sec.
    Max Memory :                                 53 MB
    Average Memory :                             43.00 MB
    Total Requested Memory :                     20048.00 MB
    Delta Memory :                               19995.00 MB
    Max Swap :                                   -
    Max Processes :                              5
    Max Threads :                                14
    Run time :                                   45 sec.
    Turnaround time :                            31 sec.

The output (if any) is above this job summary.