cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2
/share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin
cellranger mkref (3.0.2)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
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May 12 10:32:06 ..... Started STAR run
May 12 10:32:06 ... Starting to generate Genome files
May 12 10:32:41 ... starting to sort  Suffix Array. This may take a long time...
May 12 10:32:45 ... sorting Suffix Array chunks and saving them to disk...
May 12 10:50:36 ... loading chunks from disk, packing SA...
May 12 10:51:09 ... Finished generating suffix array
May 12 10:51:09 ... Generating Suffix Array index
May 12 10:52:43 ... Completed Suffix Array index
May 12 10:52:43 ..... Processing annotations GTF
May 12 10:52:52 ..... Inserting junctions into the genome indices
May 12 10:58:25 ... writing Genome to disk ...
May 12 10:58:30 ... writing Suffix Array to disk ...
May 12 10:58:48 ... writing SAindex to disk
May 12 10:58:52 ..... Finished successfully
Creating new reference folder at /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3/GRCz11_v4.3
...done

Writing genome FASTA file into reference folder...
...done

Computing hash of genome FASTA file...
...done

Indexing genome FASTA file...
...done

Writing genes GTF file into reference folder...
...done

Computing hash of genes GTF file...
...done

Writing genes index file into reference folder (may take over 10 minutes for a 3Gb genome)...
...done

Writing genome metadata JSON file into reference folder...
...done

Generating STAR genome index (may take over 8 core hours for a 3Gb genome)...
...done.

>>> Reference successfully created! <<<

You can now specify this reference on the command line:
cellranger --transcriptome=/share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3/GRCz11_v4.3 ...

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Sender: LSF System <lsfadmin@c38b16>
Subject: Job 6839904: <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3 && cellranger mkref --genome=GRCz11_v4.3 --fasta=danRer11.primary.fa --genes=V4.3.validated.gtf --ref-version=1.0.0> in cluster <umghpcc> Done

Job <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3 && cellranger mkref --genome=GRCz11_v4.3 --fasta=danRer11.primary.fa --genes=V4.3.validated.gtf --ref-version=1.0.0> was submitted from host <ghpcc06> by user <gxy11w> in cluster <umghpcc> at Tue May 12 10:29:56 2020
Job was executed on host(s) <c38b16>, in queue <long>, as user <gxy11w> in cluster <umghpcc> at Tue May 12 10:29:56 2020
</home/gxy11w> was used as the home directory.
</share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3> was used as the working directory.
Started at Tue May 12 10:29:56 2020
Terminated at Tue May 12 10:58:53 2020
Results reported at Tue May 12 10:58:53 2020

Your job looked like:

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# LSBATCH: User input
module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3 && cellranger mkref --genome=GRCz11_v4.3 --fasta=danRer11.primary.fa --genes=V4.3.validated.gtf --ref-version=1.0.0
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Successfully completed.

Resource usage summary:

    CPU time :                                   1669.29 sec.
    Max Memory :                                 18718 MB
    Average Memory :                             11085.10 MB
    Total Requested Memory :                     20048.00 MB
    Delta Memory :                               1330.00 MB
    Max Swap :                                   -
    Max Processes :                              6
    Max Threads :                                15
    Run time :                                   1740 sec.
    Turnaround time :                            1737 sec.

The output (if any) is above this job summary.