MamGyp-int|LTR|Gypsy-HOMER41074 chr1 19980244 19980514 1 LTR MamGyp-int|LTR|Gypsy-HOMER41076 chr1 19980922 19980975 1 LTR MamGyp-int|LTR|Gypsy-HOMER41078 chr1 19981430 19981746 1 LTR MamGyp-int|LTR|Gypsy-HOMER59703 chr1 27052845 27052985 1 LTR MamGyp-int|LTR|Gypsy-HOMER59705 chr1 27053297 27053371 1 LTR MamGyp-int|LTR|Gypsy-HOMER83865 chr1 36508642 36508772 1 LTR MamGyp-int|LTR|Gypsy-HOMER83872 chr1 36511221 36511377 0 LTR MamGyp-int|LTR|Gypsy-HOMER83877 chr1 36512066 36512191 0 LTR MamGyp-int|LTR|Gypsy-HOMER88465 chr1 38587005 38587444 1 LTR MamGyp-int|LTR|Gypsy-HOMER88467 chr1 38587752 38588455 1 LTR MamGyp-int|LTR|Gypsy-HOMER88468 chr1 38588745 38588925 1 LTR MamGyp-int|LTR|Gypsy-HOMER100120 chr1 43508860 43509019 1 LTR MamGyp-int|LTR|Gypsy-HOMER100125 chr1 43509640 43510977 1 LTR MamGyp-int|LTR|Gypsy-HOMER100127 chr1 43511292 43511400 1 LTR MamGyp-int|LTR|Gypsy-HOMER106363 chr1 46146196 46146489 1 LTR MamGyp-int|LTR|Gypsy-HOMER106365 chr1 46146610 46146686 1 LTR MamGyp-int|LTR|Gypsy-HOMER106367 chr1 46146756 46146904 1 LTR MamGyp-int|LTR|Gypsy-HOMER106368 chr1 46146976 46147097 1 LTR MamGyp-int|LTR|Gypsy-HOMER106371 chr1 46147725 46147888 1 LTR MamGyp-int|LTR|Gypsy-HOMER106372 chr1 46148044 46148144 1 LTR MamGyp-int|LTR|Gypsy-HOMER106381 chr1 46150123 46150803 1 LTR MamGyp-int|LTR|Gypsy-HOMER106383 chr1 46151110 46151462 1 LTR MamGyp-int|LTR|Gypsy-HOMER106385 chr1 46151588 46152560 1 LTR MamGyp-int|LTR|Gypsy-HOMER106387 chr1 46152862 46153172 1 LTR MamGyp-int|LTR|Gypsy-HOMER153984 chr1 67858521 67858620 0 LTR MamGyp-int|LTR|Gypsy-HOMER163875 chr1 73782690 73783085 0 LTR MamGyp-int|LTR|Gypsy-HOMER163876 chr1 73783502 73783856 0 LTR MamGyp-int|LTR|Gypsy-HOMER170783 chr1 77770439 77770745 0 LTR MamGyp-int|LTR|Gypsy-HOMER170803 chr1 77777649 77777842 0 LTR MamGyp-int|LTR|Gypsy-HOMER172418 chr1 78646295 78646353 0 LTR MamGyp-int|LTR|Gypsy-HOMER215524 chr1 103424541 103425133 1 LTR MamGyp-int|LTR|Gypsy-HOMER215526 chr1 103425574 103426000 1 LTR MamGyp-int|LTR|Gypsy-HOMER222819 chr1 108085827 108086011 0 LTR MamGyp-int|LTR|Gypsy-HOMER222820 chr1 108086082 108086696 0 LTR MamGyp-int|LTR|Gypsy-HOMER222822 chr1 108086829 108087456 0 LTR MamGyp-int|LTR|Gypsy-HOMER222823 chr1 108087722 108087862 0 LTR MamGyp-int|LTR|Gypsy-HOMER222920 chr1 108130171 108130344 0 LTR MamGyp-int|LTR|Gypsy-HOMER222921 chr1 108130530 108130635 0 LTR MamGyp-int|LTR|Gypsy-HOMER222922 chr1 108130706 108130966 0 LTR MamGyp-int|LTR|Gypsy-HOMER228969 chr1 111413181 111413281 0 LTR MamGyp-int|LTR|Gypsy-HOMER240737 chr1 117334839 117335198 0 LTR MamGyp-int|LTR|Gypsy-HOMER240739 chr1 117335500 117336856 0 LTR MamGyp-int|LTR|Gypsy-HOMER240743 chr1 117337454 117337579 0 LTR MamGyp-int|LTR|Gypsy-HOMER240745 chr1 117338115 117338754 0 LTR MamGyp-int|LTR|Gypsy-HOMER244798 chr1 119784516 119784737 1 LTR MamGyp-int|LTR|Gypsy-HOMER244800 chr1 119785057 119785319 1 LTR MamGyp-int|LTR|Gypsy-HOMER254618 chr1 146577110 146577422 1 LTR MamGyp-int|LTR|Gypsy-HOMER276680 chr1 157226533 157226784 1 LTR MamGyp-int|LTR|Gypsy-HOMER277777 chr1 157894164 157894304 1 LTR MamGyp-int|LTR|Gypsy-HOMER277809 chr1 157916430 157916615 1 LTR MamGyp-int|LTR|Gypsy-HOMER278350 chr1 158189208 158189598 0 LTR MamGyp-int|LTR|Gypsy-HOMER278351 chr1 158189761 158189985 0 LTR MamGyp-int|LTR|Gypsy-HOMER280306 chr1 159493363 159493532 0 LTR MamGyp-int|LTR|Gypsy-HOMER300450 chr1 170437974 170438561 0 LTR MamGyp-int|LTR|Gypsy-HOMER305869 chr1 173549586 173549740 0 LTR MamGyp-int|LTR|Gypsy-HOMER332082 chr1 187836991 187837310 1 LTR MamGyp-int|LTR|Gypsy-HOMER332085 chr1 187837820 187838081 1 LTR MamGyp-int|LTR|Gypsy-HOMER332098 chr1 187843113 187843796 1 LTR MamGyp-int|LTR|Gypsy-HOMER346940 chr1 197216684 197216899 0 LTR MamGyp-int|LTR|Gypsy-HOMER388298 chr1 219419747 219419968 1 LTR MamGyp-int|LTR|Gypsy-HOMER388618 chr1 219599349 219600006 0 LTR MamGyp-int|LTR|Gypsy-HOMER388620 chr1 219600053 219600145 0 LTR MamGyp-int|LTR|Gypsy-HOMER388622 chr1 219601447 219602058 0 LTR MamGyp-int|LTR|Gypsy-HOMER447762 chr10 2671653 2671745 1 LTR MamGyp-int|LTR|Gypsy-HOMER450593 chr10 4474541 4474802 0 LTR MamGyp-int|LTR|Gypsy-HOMER496326 chr10 28470310 28470386 1 LTR MamGyp-int|LTR|Gypsy-HOMER502815 chr10 31733222 31733638 1 LTR MamGyp-int|LTR|Gypsy-HOMER502817 chr10 31734369 31734943 1 LTR MamGyp-int|LTR|Gypsy-HOMER502819 chr10 31735068 31735436 1 LTR MamGyp-int|LTR|Gypsy-HOMER502839 chr10 31745675 31745962 1 LTR MamGyp-int|LTR|Gypsy-HOMER518910 chr10 43643212 43643758 0 LTR MamGyp-int|LTR|Gypsy-HOMER521586 chr10 45460134 45460194 1 LTR MamGyp-int|LTR|Gypsy-HOMER587615 chr10 80898788 80898929 1 LTR MamGyp-int|LTR|Gypsy-HOMER587617 chr10 80899422 80899896 1 LTR MamGyp-int|LTR|Gypsy-HOMER587619 chr10 80900117 80900189 1 LTR MamGyp-int|LTR|Gypsy-HOMER588895 chr10 81637605 81637711 1 LTR MamGyp-int|LTR|Gypsy-HOMER588896 chr10 81637825 81638177 1 LTR MamGyp-int|LTR|Gypsy-HOMER588900 chr10 81645293 81645790 1 LTR MamGyp-int|LTR|Gypsy-HOMER693398 chr11 5196896 5197122 1 LTR MamGyp-int|LTR|Gypsy-HOMER717859 chr11 18258128 18258184 0 LTR MamGyp-int|LTR|Gypsy-HOMER732847 chr11 26676445 26677138 0 LTR MamGyp-int|LTR|Gypsy-HOMER732848 chr11 26677381 26677805 0 LTR MamGyp-int|LTR|Gypsy-HOMER747849 chr11 34574596 34574701 1 LTR MamGyp-int|LTR|Gypsy-HOMER747850 chr11 34574767 34574868 1 LTR MamGyp-int|LTR|Gypsy-HOMER754609 chr11 38450548 38450846 0 LTR MamGyp-int|LTR|Gypsy-HOMER754610 chr11 38451677 38451819 0 LTR MamGyp-int|LTR|Gypsy-HOMER754611 chr11 38452102 38452498 0 LTR MamGyp-int|LTR|Gypsy-HOMER774429 chr11 48371649 48371789 0 LTR MamGyp-int|LTR|Gypsy-HOMER776618 chr11 50013488 50013586 1 LTR MamGyp-int|LTR|Gypsy-HOMER803326 chr11 67577991 67578406 0 LTR MamGyp-int|LTR|Gypsy-HOMER826392 chr11 78013749 78013812 0 LTR MamGyp-int|LTR|Gypsy-HOMER826394 chr11 78014000 78014185 0 LTR MamGyp-int|LTR|Gypsy-HOMER826396 chr11 78014304 78014631 0 LTR MamGyp-int|LTR|Gypsy-HOMER834873 chr11 82177442 82177580 1 LTR MamGyp-int|LTR|Gypsy-HOMER834874 chr11 82177767 82178092 1 LTR MamGyp-int|LTR|Gypsy-HOMER860820 chr11 96644365 96644451 1 LTR MamGyp-int|LTR|Gypsy-HOMER860821 chr11 96644592 96645114 1 LTR MamGyp-int|LTR|Gypsy-HOMER925578 chr11 132353909 132354138 0 LTR MamGyp-int|LTR|Gypsy-HOMER947367 chr12 7047341 7047610 0 LTR MamGyp-int|LTR|Gypsy-HOMER954435 chr12 10733909 10734204 0 LTR MamGyp-int|LTR|Gypsy-HOMER954436 chr12 10734342 10734797 0 LTR MamGyp-int|LTR|Gypsy-HOMER968429 chr12 18810162 18810287 0 LTR MamGyp-int|LTR|Gypsy-HOMER977657 chr12 24305259 24305583 0 LTR MamGyp-int|LTR|Gypsy-HOMER977659 chr12 24306015 24306309 0 LTR MamGyp-int|LTR|Gypsy-HOMER977853 chr12 24407605 24407676 0 LTR MamGyp-int|LTR|Gypsy-HOMER1021599 chr12 51400078 51400726 0 LTR MamGyp-int|LTR|Gypsy-HOMER1021605 chr12 51402081 51402336 0 LTR MamGyp-int|LTR|Gypsy-HOMER1021608 chr12 51402902 51403019 0 LTR MamGyp-int|LTR|Gypsy-HOMER1021610 chr12 51403185 51403380 0 LTR MamGyp-int|LTR|Gypsy-HOMER1021612 chr12 51404014 51404316 0 LTR MamGyp-int|LTR|Gypsy-HOMER1021616 chr12 51405023 51405105 0 LTR MamGyp-int|LTR|Gypsy-HOMER1050865 chr12 67326624 67326695 0 LTR MamGyp-int|LTR|Gypsy-HOMER1051101 chr12 67448093 67449925 1 LTR MamGyp-int|LTR|Gypsy-HOMER1051102 chr12 67450106 67450313 1 LTR MamGyp-int|LTR|Gypsy-HOMER1051104 chr12 67451251 67451573 1 LTR MamGyp-int|LTR|Gypsy-HOMER1051105 chr12 67451599 67451669 1 LTR MamGyp-int|LTR|Gypsy-HOMER1079036 chr12 83476812 83477117 0 LTR MamGyp-int|LTR|Gypsy-HOMER1079038 chr12 83477648 83478103 0 LTR MamGyp-int|LTR|Gypsy-HOMER1085131 chr12 87349738 87350095 1 LTR MamGyp-int|LTR|Gypsy-HOMER1085134 chr12 87351160 87351657 1 LTR MamGyp-int|LTR|Gypsy-HOMER1087564 chr12 88864504 88865152 1 LTR MamGyp-int|LTR|Gypsy-HOMER1092053 chr12 91357932 91358602 0 LTR MamGyp-int|LTR|Gypsy-HOMER1092055 chr12 91359750 91360193 0 LTR MamGyp-int|LTR|Gypsy-HOMER1106398 chr12 98241580 98241846 0 LTR MamGyp-int|LTR|Gypsy-HOMER1118051 chr12 103999758 103999844 1 LTR MamGyp-int|LTR|Gypsy-HOMER1168952 chr12 123992594 123992767 0 LTR MamGyp-int|LTR|Gypsy-HOMER1168953 chr12 123992925 123993831 0 LTR MamGyp-int|LTR|Gypsy-HOMER1209016 chr13 27740140 27740349 1 LTR MamGyp-int|LTR|Gypsy-HOMER1209018 chr13 27741803 27741895 1 LTR MamGyp-int|LTR|Gypsy-HOMER1215240 chr13 30977578 30977723 1 LTR MamGyp-int|LTR|Gypsy-HOMER1262302 chr13 57565908 57566697 0 LTR MamGyp-int|LTR|Gypsy-HOMER1264248 chr13 58910576 58911063 1 LTR MamGyp-int|LTR|Gypsy-HOMER1264249 chr13 58911275 58911449 1 LTR MamGyp-int|LTR|Gypsy-HOMER1264270 chr13 58925325 58925653 1 LTR MamGyp-int|LTR|Gypsy-HOMER1264271 chr13 58925688 58925949 1 LTR MamGyp-int|LTR|Gypsy-HOMER1282756 chr13 70676460 70676844 1 LTR MamGyp-int|LTR|Gypsy-HOMER1282760 chr13 70678118 70678342 0 LTR MamGyp-int|LTR|Gypsy-HOMER1292960 chr13 76699531 76699692 1 LTR MamGyp-int|LTR|Gypsy-HOMER1292970 chr13 76703241 76703392 0 LTR MamGyp-int|LTR|Gypsy-HOMER1292977 chr13 76706428 76707282 0 LTR MamGyp-int|LTR|Gypsy-HOMER1299655 chr13 80756046 80756112 1 LTR MamGyp-int|LTR|Gypsy-HOMER1302776 chr13 82791597 82791687 1 LTR MamGyp-int|LTR|Gypsy-HOMER1308599 chr13 86608308 86608434 0 LTR MamGyp-int|LTR|Gypsy-HOMER1308600 chr13 86608560 86608968 0 LTR MamGyp-int|LTR|Gypsy-HOMER1313322 chr13 89545058 89545307 0 LTR MamGyp-int|LTR|Gypsy-HOMER1313574 chr13 89686943 89687045 1 LTR MamGyp-int|LTR|Gypsy-HOMER1314979 chr13 90574880 90575485 1 LTR MamGyp-int|LTR|Gypsy-HOMER1314982 chr13 90577233 90577599 1 LTR MamGyp-int|LTR|Gypsy-HOMER1314988 chr13 90580036 90580424 1 LTR MamGyp-int|LTR|Gypsy-HOMER1319132 chr13 93163905 93164552 1 LTR MamGyp-int|LTR|Gypsy-HOMER1321627 chr13 94686632 94686801 0 LTR MamGyp-int|LTR|Gypsy-HOMER1322019 chr13 94886023 94886346 1 LTR MamGyp-int|LTR|Gypsy-HOMER1330094 chr13 99176170 99176529 0 LTR MamGyp-int|LTR|Gypsy-HOMER1339431 chr13 104665942 104666325 0 LTR MamGyp-int|LTR|Gypsy-HOMER1354641 chr13_KI270841v1_alt 91984 92086 1 LTR MamGyp-int|LTR|Gypsy-HOMER1373950 chr14 29991093 29991303 1 LTR MamGyp-int|LTR|Gypsy-HOMER1389573 chr14 38502621 38502700 1 LTR MamGyp-int|LTR|Gypsy-HOMER1394157 chr14 41341003 41341172 0 LTR MamGyp-int|LTR|Gypsy-HOMER1394160 chr14 41341800 41341981 1 LTR MamGyp-int|LTR|Gypsy-HOMER1394165 chr14 41343858 41343990 1 LTR MamGyp-int|LTR|Gypsy-HOMER1394169 chr14 41345014 41345233 1 LTR MamGyp-int|LTR|Gypsy-HOMER1394174 chr14 41348388 41348973 1 LTR MamGyp-int|LTR|Gypsy-HOMER1395212 chr14 42018468 42018760 0 LTR MamGyp-int|LTR|Gypsy-HOMER1395219 chr14 42022214 42022439 0 LTR MamGyp-int|LTR|Gypsy-HOMER1398055 chr14 43906501 43907041 1 LTR MamGyp-int|LTR|Gypsy-HOMER1399506 chr14 44828179 44828226 0 LTR MamGyp-int|LTR|Gypsy-HOMER1399507 chr14 44828460 44828557 0 LTR MamGyp-int|LTR|Gypsy-HOMER1404336 chr14 47912324 47912672 0 LTR MamGyp-int|LTR|Gypsy-HOMER1430191 chr14 62234477 62235337 1 LTR MamGyp-int|LTR|Gypsy-HOMER1453309 chr14 73712619 73713668 1 LTR MamGyp-int|LTR|Gypsy-HOMER1491437 chr14 93183224 93184271 1 LTR MamGyp-int|LTR|Gypsy-HOMER1507049 chr14 100791520 100791597 1 LTR MamGyp-int|LTR|Gypsy-HOMER1518166 chr14_GL000009v2_random 155180 155345 1 LTR MamGyp-int|LTR|Gypsy-HOMER1518732 chr14_KI270722v1_random 37138 37302 0 LTR MamGyp-int|LTR|Gypsy-HOMER1522848 chr14_KI270847v1_alt 297786 298833 1 LTR MamGyp-int|LTR|Gypsy-HOMER1536596 chr15 26341713 26341787 1 LTR MamGyp-int|LTR|Gypsy-HOMER1573007 chr15 46032643 46033147 0 LTR MamGyp-int|LTR|Gypsy-HOMER1573245 chr15 46218278 46218506 0 LTR MamGyp-int|LTR|Gypsy-HOMER1573246 chr15 46219225 46219381 0 LTR MamGyp-int|LTR|Gypsy-HOMER1581368 chr15 50871220 50871386 1 LTR MamGyp-int|LTR|Gypsy-HOMER1590843 chr15 56048021 56048107 0 LTR MamGyp-int|LTR|Gypsy-HOMER1602751 chr15 62338181 62338491 1 LTR MamGyp-int|LTR|Gypsy-HOMER1604296 chr15 63161333 63161592 1 LTR MamGyp-int|LTR|Gypsy-HOMER1604301 chr15 63162990 63163228 1 LTR MamGyp-int|LTR|Gypsy-HOMER1642992 chr15 81104486 81104698 0 LTR MamGyp-int|LTR|Gypsy-HOMER1647324 chr15 83249268 83249352 0 LTR MamGyp-int|LTR|Gypsy-HOMER1647331 chr15 83251348 83251492 0 LTR MamGyp-int|LTR|Gypsy-HOMER1664094 chr15 91540428 91540709 1 LTR MamGyp-int|LTR|Gypsy-HOMER1664095 chr15 91540811 91541346 1 LTR MamGyp-int|LTR|Gypsy-HOMER1664100 chr15 91542468 91543282 1 LTR MamGyp-int|LTR|Gypsy-HOMER1664102 chr15 91543314 91543618 1 LTR MamGyp-int|LTR|Gypsy-HOMER1751318 chr16 22965041 22965159 1 LTR MamGyp-int|LTR|Gypsy-HOMER1753478 chr16 23745688 23745888 1 LTR MamGyp-int|LTR|Gypsy-HOMER1753479 chr16 23745956 23746131 1 LTR MamGyp-int|LTR|Gypsy-HOMER1757718 chr16 25235769 25235919 0 LTR MamGyp-int|LTR|Gypsy-HOMER1816768 chr16 64519589 64519899 1 LTR MamGyp-int|LTR|Gypsy-HOMER1831551 chr16 71133769 71134011 0 LTR MamGyp-int|LTR|Gypsy-HOMER1897396 chr17 6973861 6974191 0 LTR MamGyp-int|LTR|Gypsy-HOMER1897399 chr17 6974882 6975037 0 LTR MamGyp-int|LTR|Gypsy-HOMER1913764 chr17 14576737 14576820 0 LTR MamGyp-int|LTR|Gypsy-HOMER1921215 chr17 18078651 18078745 1 LTR MamGyp-int|LTR|Gypsy-HOMER1985292 chr17 50785426 50785526 1 LTR MamGyp-int|LTR|Gypsy-HOMER1985294 chr17 50786019 50786155 1 LTR MamGyp-int|LTR|Gypsy-HOMER1985396 chr17 50820353 50820547 1 LTR MamGyp-int|LTR|Gypsy-HOMER1985399 chr17 50821675 50821921 1 LTR MamGyp-int|LTR|Gypsy-HOMER1985403 chr17 50823236 50823555 1 LTR MamGyp-int|LTR|Gypsy-HOMER1999873 chr17 58225933 58226545 1 LTR MamGyp-int|LTR|Gypsy-HOMER2077026 chr18 2649871 2649970 1 LTR MamGyp-int|LTR|Gypsy-HOMER2118029 chr18 31047447 31047557 1 LTR MamGyp-int|LTR|Gypsy-HOMER2118038 chr18 31051700 31052277 1 LTR MamGyp-int|LTR|Gypsy-HOMER2121344 chr18 32824490 32824692 1 LTR MamGyp-int|LTR|Gypsy-HOMER2121345 chr18 32824690 32824755 1 LTR MamGyp-int|LTR|Gypsy-HOMER2121347 chr18 32824924 32825401 1 LTR MamGyp-int|LTR|Gypsy-HOMER2121349 chr18 32825531 32825620 1 LTR MamGyp-int|LTR|Gypsy-HOMER2121350 chr18 32826232 32826524 1 LTR MamGyp-int|LTR|Gypsy-HOMER2137160 chr18 42680006 42680645 0 LTR MamGyp-int|LTR|Gypsy-HOMER2137161 chr18 42680821 42681042 0 LTR MamGyp-int|LTR|Gypsy-HOMER2140997 chr18 45069486 45069790 1 LTR MamGyp-int|LTR|Gypsy-HOMER2161376 chr18 56209013 56209244 1 LTR MamGyp-int|LTR|Gypsy-HOMER2161377 chr18 56209255 56209609 0 LTR MamGyp-int|LTR|Gypsy-HOMER2170847 chr18 61396126 61396199 1 LTR MamGyp-int|LTR|Gypsy-HOMER2170848 chr18 61396225 61396670 1 LTR MamGyp-int|LTR|Gypsy-HOMER2186184 chr18 70508060 70508391 1 LTR MamGyp-int|LTR|Gypsy-HOMER2186185 chr18 70508815 70508930 1 LTR MamGyp-int|LTR|Gypsy-HOMER2196752 chr18 77409867 77410032 1 LTR MamGyp-int|LTR|Gypsy-HOMER2197111 chr18 77655694 77655888 1 LTR MamGyp-int|LTR|Gypsy-HOMER2197113 chr18 77656189 77656346 1 LTR MamGyp-int|LTR|Gypsy-HOMER2197114 chr18 77656595 77657195 1 LTR MamGyp-int|LTR|Gypsy-HOMER2197117 chr18 77659643 77659803 1 LTR MamGyp-int|LTR|Gypsy-HOMER2290238 chr19 39802999 39803220 0 LTR MamGyp-int|LTR|Gypsy-HOMER2306982 chr19 46412620 46412892 1 LTR MamGyp-int|LTR|Gypsy-HOMER2307028 chr19 46427935 46428422 1 LTR MamGyp-int|LTR|Gypsy-HOMER2307169 chr19 46468458 46468577 1 LTR MamGyp-int|LTR|Gypsy-HOMER2307174 chr19 46470583 46471094 1 LTR MamGyp-int|LTR|Gypsy-HOMER2307246 chr19 46495194 46495527 1 LTR MamGyp-int|LTR|Gypsy-HOMER2374656 chr2 3022597 3022734 0 LTR MamGyp-int|LTR|Gypsy-HOMER2374658 chr2 3023579 3023691 0 LTR MamGyp-int|LTR|Gypsy-HOMER2379321 chr2 5978195 5979193 0 LTR MamGyp-int|LTR|Gypsy-HOMER2401357 chr2 17861178 17861774 0 LTR MamGyp-int|LTR|Gypsy-HOMER2401359 chr2 17862066 17862246 0 LTR MamGyp-int|LTR|Gypsy-HOMER2403834 chr2 19392685 19392899 0 LTR MamGyp-int|LTR|Gypsy-HOMER2403835 chr2 19392963 19393031 0 LTR MamGyp-int|LTR|Gypsy-HOMER2424735 chr2 29985090 29985484 1 LTR MamGyp-int|LTR|Gypsy-HOMER2474923 chr2 57160695 57160797 1 LTR MamGyp-int|LTR|Gypsy-HOMER2474935 chr2 57165553 57165821 1 LTR MamGyp-int|LTR|Gypsy-HOMER2497058 chr2 69308749 69309227 0 LTR MamGyp-int|LTR|Gypsy-HOMER2505172 chr2 73326062 73326401 1 LTR MamGyp-int|LTR|Gypsy-HOMER2513991 chr2 78273703 78273763 0 LTR MamGyp-int|LTR|Gypsy-HOMER2542693 chr2 98140864 98141154 1 LTR MamGyp-int|LTR|Gypsy-HOMER2542694 chr2 98141176 98141232 1 LTR MamGyp-int|LTR|Gypsy-HOMER2542696 chr2 98141646 98141834 1 LTR MamGyp-int|LTR|Gypsy-HOMER2555466 chr2 105560247 105560437 1 LTR MamGyp-int|LTR|Gypsy-HOMER2560201 chr2 108269550 108269726 1 LTR MamGyp-int|LTR|Gypsy-HOMER2564548 chr2 110713826 110714106 1 LTR MamGyp-int|LTR|Gypsy-HOMER2564551 chr2 110715397 110715662 1 LTR MamGyp-int|LTR|Gypsy-HOMER2568761 chr2 112961303 112961441 1 LTR MamGyp-int|LTR|Gypsy-HOMER2568762 chr2 112961523 112961733 1 LTR MamGyp-int|LTR|Gypsy-HOMER2570062 chr2 113674169 113674456 0 LTR MamGyp-int|LTR|Gypsy-HOMER2582487 chr2 120692860 120693074 1 LTR MamGyp-int|LTR|Gypsy-HOMER2591524 chr2 125663247 125663369 0 LTR MamGyp-int|LTR|Gypsy-HOMER2591525 chr2 125663516 125663643 1 LTR MamGyp-int|LTR|Gypsy-HOMER2611963 chr2 137044161 137044328 1 LTR MamGyp-int|LTR|Gypsy-HOMER2649721 chr2 160653170 160653272 0 LTR MamGyp-int|LTR|Gypsy-HOMER2660245 chr2 167436657 167437568 1 LTR MamGyp-int|LTR|Gypsy-HOMER2660246 chr2 167437757 167437943 1 LTR MamGyp-int|LTR|Gypsy-HOMER2689227 chr2 184465352 184465610 0 LTR MamGyp-int|LTR|Gypsy-HOMER2694439 chr2 187782772 187783103 1 LTR MamGyp-int|LTR|Gypsy-HOMER2705074 chr2 194338084 194338181 1 LTR MamGyp-int|LTR|Gypsy-HOMER2705076 chr2 194338479 194338639 1 LTR MamGyp-int|LTR|Gypsy-HOMER2709142 chr2 196801211 196801356 0 LTR MamGyp-int|LTR|Gypsy-HOMER2763609 chr2 226652767 226652952 0 LTR MamGyp-int|LTR|Gypsy-HOMER2763611 chr2 226653808 226653911 0 LTR MamGyp-int|LTR|Gypsy-HOMER2763615 chr2 226654712 226655009 0 LTR MamGyp-int|LTR|Gypsy-HOMER2779282 chr2 234591106 234591372 0 LTR MamGyp-int|LTR|Gypsy-HOMER2802484 chr20 4706718 4706905 1 LTR MamGyp-int|LTR|Gypsy-HOMER2806669 chr20 6627677 6627968 1 LTR MamGyp-int|LTR|Gypsy-HOMER2806670 chr20 6627988 6628099 1 LTR MamGyp-int|LTR|Gypsy-HOMER2820647 chr20 14523661 14523818 1 LTR MamGyp-int|LTR|Gypsy-HOMER2820649 chr20 14524253 14524488 1 LTR MamGyp-int|LTR|Gypsy-HOMER2833782 chr20 21803765 21803951 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835334 chr20 22879265 22879682 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835336 chr20 22880183 22880564 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835338 chr20 22881212 22881671 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835339 chr20 22881690 22882278 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835340 chr20 22882291 22882395 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835349 chr20 22887286 22887421 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835350 chr20 22887497 22887651 0 LTR MamGyp-int|LTR|Gypsy-HOMER2835357 chr20 22889660 22889994 0 LTR MamGyp-int|LTR|Gypsy-HOMER2878387 chr20 45188951 45189143 1 LTR MamGyp-int|LTR|Gypsy-HOMER2897075 chr20 52238709 52238772 0 LTR MamGyp-int|LTR|Gypsy-HOMER2897077 chr20 52238903 52238941 0 LTR MamGyp-int|LTR|Gypsy-HOMER2943274 chr21 23117465 23117768 1 LTR MamGyp-int|LTR|Gypsy-HOMER2943275 chr21 23118182 23118359 1 LTR MamGyp-int|LTR|Gypsy-HOMER2952449 chr21 28480234 28480295 1 LTR MamGyp-int|LTR|Gypsy-HOMER2952956 chr21 28769115 28770030 1 LTR MamGyp-int|LTR|Gypsy-HOMER2954368 chr21 29505988 29506549 0 LTR MamGyp-int|LTR|Gypsy-HOMER2954370 chr21 29507160 29507284 0 LTR MamGyp-int|LTR|Gypsy-HOMER2964165 chr21 34500914 34501414 0 LTR MamGyp-int|LTR|Gypsy-HOMER2964183 chr21 34511640 34512477 1 LTR MamGyp-int|LTR|Gypsy-HOMER2973402 chr21 39425141 39425697 0 LTR MamGyp-int|LTR|Gypsy-HOMER3029673 chr22 34088104 34088184 1 LTR MamGyp-int|LTR|Gypsy-HOMER3041653 chr22 38952156 38952354 0 LTR MamGyp-int|LTR|Gypsy-HOMER3066953 chr22_GL383583v2_alt 67864 68062 0 LTR MamGyp-int|LTR|Gypsy-HOMER3117527 chr3 22797399 22797531 0 LTR MamGyp-int|LTR|Gypsy-HOMER3136613 chr3 33117863 33117940 1 LTR MamGyp-int|LTR|Gypsy-HOMER3136616 chr3 33118259 33118595 1 LTR MamGyp-int|LTR|Gypsy-HOMER3138297 chr3 33880988 33881220 0 LTR MamGyp-int|LTR|Gypsy-HOMER3146610 chr3 38679929 38680067 0 LTR MamGyp-int|LTR|Gypsy-HOMER3146612 chr3 38680577 38680952 0 LTR MamGyp-int|LTR|Gypsy-HOMER3149541 chr3 40320232 40320409 1 LTR MamGyp-int|LTR|Gypsy-HOMER3150701 chr3 40857349 40857648 0 LTR MamGyp-int|LTR|Gypsy-HOMER3150883 chr3 40985147 40985237 0 LTR MamGyp-int|LTR|Gypsy-HOMER3151213 chr3 41154321 41154514 0 LTR MamGyp-int|LTR|Gypsy-HOMER3151218 chr3 41155794 41155887 0 LTR MamGyp-int|LTR|Gypsy-HOMER3151219 chr3 41156187 41156392 0 LTR MamGyp-int|LTR|Gypsy-HOMER3221708 chr3 77720442 77720579 1 LTR MamGyp-int|LTR|Gypsy-HOMER3221709 chr3 77720597 77720912 1 LTR MamGyp-int|LTR|Gypsy-HOMER3221710 chr3 77720975 77721054 0 LTR MamGyp-int|LTR|Gypsy-HOMER3225816 chr3 80414250 80414545 0 LTR MamGyp-int|LTR|Gypsy-HOMER3229925 chr3 83020982 83021539 1 LTR MamGyp-int|LTR|Gypsy-HOMER3231030 chr3 83766046 83766335 0 LTR MamGyp-int|LTR|Gypsy-HOMER3239700 chr3 89557828 89557952 1 LTR MamGyp-int|LTR|Gypsy-HOMER3239701 chr3 89558013 89558197 1 LTR MamGyp-int|LTR|Gypsy-HOMER3245846 chr3 96900765 96901036 0 LTR MamGyp-int|LTR|Gypsy-HOMER3245847 chr3 96901849 96901925 0 LTR MamGyp-int|LTR|Gypsy-HOMER3265615 chr3 109196820 109196965 1 LTR MamGyp-int|LTR|Gypsy-HOMER3265621 chr3 109198544 109199858 1 LTR MamGyp-int|LTR|Gypsy-HOMER3265623 chr3 109205907 109206118 1 LTR MamGyp-int|LTR|Gypsy-HOMER3265625 chr3 109206409 109206547 1 LTR MamGyp-int|LTR|Gypsy-HOMER3276221 chr3 115498443 115498872 0 LTR MamGyp-int|LTR|Gypsy-HOMER3276222 chr3 115499004 115500000 0 LTR MamGyp-int|LTR|Gypsy-HOMER3296707 chr3 127050719 127051098 1 LTR MamGyp-int|LTR|Gypsy-HOMER3317139 chr3 137652469 137652705 1 LTR MamGyp-int|LTR|Gypsy-HOMER3317472 chr3 137859757 137860256 1 LTR MamGyp-int|LTR|Gypsy-HOMER3317474 chr3 137861270 137861681 1 LTR MamGyp-int|LTR|Gypsy-HOMER3342174 chr3 151699694 151699876 0 LTR MamGyp-int|LTR|Gypsy-HOMER3342218 chr3 151731715 151731897 1 LTR MamGyp-int|LTR|Gypsy-HOMER3342507 chr3 151908332 151908465 0 LTR MamGyp-int|LTR|Gypsy-HOMER3342509 chr3 151909094 151909803 0 LTR MamGyp-int|LTR|Gypsy-HOMER3342510 chr3 151909854 151910039 0 LTR MamGyp-int|LTR|Gypsy-HOMER3342511 chr3 151910144 151910303 0 LTR MamGyp-int|LTR|Gypsy-HOMER3343790 chr3 152707703 152707769 1 LTR MamGyp-int|LTR|Gypsy-HOMER3344385 chr3 153020486 153020760 0 LTR MamGyp-int|LTR|Gypsy-HOMER3348567 chr3 155444519 155445056 1 LTR MamGyp-int|LTR|Gypsy-HOMER3361203 chr3 162878325 162878748 0 LTR MamGyp-int|LTR|Gypsy-HOMER3361204 chr3 162879146 162879362 0 LTR MamGyp-int|LTR|Gypsy-HOMER3361962 chr3 163404762 163405001 0 LTR MamGyp-int|LTR|Gypsy-HOMER3365876 chr3 165896462 165897141 0 LTR MamGyp-int|LTR|Gypsy-HOMER3365887 chr3 165899831 165899983 0 LTR MamGyp-int|LTR|Gypsy-HOMER3380085 chr3 174360409 174360933 0 LTR MamGyp-int|LTR|Gypsy-HOMER3380095 chr3 174363578 174363841 0 LTR MamGyp-int|LTR|Gypsy-HOMER3390195 chr3 180062739 180063131 1 LTR MamGyp-int|LTR|Gypsy-HOMER3424807 chr3 197185198 197185603 0 LTR MamGyp-int|LTR|Gypsy-HOMER3427203 chr3_GL000221v1_random 110302 110467 1 LTR MamGyp-int|LTR|Gypsy-HOMER3427496 chr3_GL383526v1_alt 120867 121049 0 LTR MamGyp-int|LTR|Gypsy-HOMER3427540 chr3_GL383526v1_alt 152888 153070 1 LTR MamGyp-int|LTR|Gypsy-HOMER3429672 chr3_KI270781v1_alt 92603 92657 1 LTR MamGyp-int|LTR|Gypsy-HOMER3445106 chr4 6679767 6680232 1 LTR MamGyp-int|LTR|Gypsy-HOMER3446542 chr4 7410049 7410147 0 LTR MamGyp-int|LTR|Gypsy-HOMER3495822 chr4 34178068 34178186 1 LTR MamGyp-int|LTR|Gypsy-HOMER3495823 chr4 34178254 34178424 1 LTR MamGyp-int|LTR|Gypsy-HOMER3495825 chr4 34178855 34179003 1 LTR MamGyp-int|LTR|Gypsy-HOMER3495827 chr4 34179051 34179159 1 LTR MamGyp-int|LTR|Gypsy-HOMER3495829 chr4 34180192 34180422 1 LTR MamGyp-int|LTR|Gypsy-HOMER3544952 chr4 63998609 63998779 1 LTR MamGyp-int|LTR|Gypsy-HOMER3559209 chr4 73038249 73038568 1 LTR MamGyp-int|LTR|Gypsy-HOMER3560541 chr4 73820088 73820278 0 LTR MamGyp-int|LTR|Gypsy-HOMER3560554 chr4 73825948 73826000 0 LTR MamGyp-int|LTR|Gypsy-HOMER3588042 chr4 89228570 89228836 0 LTR MamGyp-int|LTR|Gypsy-HOMER3595415 chr4 94105724 94105799 0 LTR MamGyp-int|LTR|Gypsy-HOMER3595420 chr4 94107435 94107583 0 LTR MamGyp-int|LTR|Gypsy-HOMER3595421 chr4 94107691 94107802 0 LTR MamGyp-int|LTR|Gypsy-HOMER3603688 chr4 99159470 99159690 0 LTR MamGyp-int|LTR|Gypsy-HOMER3618957 chr4 108674549 108674607 0 LTR MamGyp-int|LTR|Gypsy-HOMER3618960 chr4 108675226 108675360 0 LTR MamGyp-int|LTR|Gypsy-HOMER3634551 chr4 118396628 118396718 1 LTR MamGyp-int|LTR|Gypsy-HOMER3634553 chr4 118396877 118396977 1 LTR MamGyp-int|LTR|Gypsy-HOMER3636807 chr4 119645041 119645278 0 LTR MamGyp-int|LTR|Gypsy-HOMER3636809 chr4 119645324 119645452 0 LTR MamGyp-int|LTR|Gypsy-HOMER3646698 chr4 125774492 125774732 0 LTR MamGyp-int|LTR|Gypsy-HOMER3647870 chr4 126591467 126591807 1 LTR MamGyp-int|LTR|Gypsy-HOMER3652898 chr4 129424210 129424812 0 LTR MamGyp-int|LTR|Gypsy-HOMER3653254 chr4 129667074 129667294 0 LTR MamGyp-int|LTR|Gypsy-HOMER3655738 chr4 131264863 131265090 0 LTR MamGyp-int|LTR|Gypsy-HOMER3655740 chr4 131265398 131265531 0 LTR MamGyp-int|LTR|Gypsy-HOMER3662099 chr4 135638938 135639023 1 LTR MamGyp-int|LTR|Gypsy-HOMER3662389 chr4 135832706 135832931 1 LTR MamGyp-int|LTR|Gypsy-HOMER3662883 chr4 136170443 136171111 1 LTR MamGyp-int|LTR|Gypsy-HOMER3663026 chr4 136277969 136278119 0 LTR MamGyp-int|LTR|Gypsy-HOMER3663028 chr4 136278866 136279171 0 LTR MamGyp-int|LTR|Gypsy-HOMER3666005 chr4 138277131 138277789 0 LTR MamGyp-int|LTR|Gypsy-HOMER3670216 chr4 140441801 140441998 1 LTR MamGyp-int|LTR|Gypsy-HOMER3685525 chr4 149842977 149843127 1 LTR MamGyp-int|LTR|Gypsy-HOMER3703742 chr4 160410983 160411161 1 LTR MamGyp-int|LTR|Gypsy-HOMER3704963 chr4 161178631 161178792 0 LTR MamGyp-int|LTR|Gypsy-HOMER3720143 chr4 170258891 170258982 0 LTR MamGyp-int|LTR|Gypsy-HOMER3720144 chr4 170259193 170259440 0 LTR MamGyp-int|LTR|Gypsy-HOMER3720146 chr4 170259632 170259699 0 LTR MamGyp-int|LTR|Gypsy-HOMER3720410 chr4 170449315 170449528 1 LTR MamGyp-int|LTR|Gypsy-HOMER3721528 chr4 171162487 171162802 0 LTR MamGyp-int|LTR|Gypsy-HOMER3733825 chr4 178848077 178848344 0 LTR MamGyp-int|LTR|Gypsy-HOMER3746650 chr4 186401329 186401593 0 LTR MamGyp-int|LTR|Gypsy-HOMER3747220 chr4 186741100 186741180 0 LTR MamGyp-int|LTR|Gypsy-HOMER3747222 chr4 186741524 186741837 0 LTR MamGyp-int|LTR|Gypsy-HOMER3752902 chr4_GL000008v2_random 52981 53146 0 LTR MamGyp-int|LTR|Gypsy-HOMER3763751 chr5 4666109 4666248 1 LTR MamGyp-int|LTR|Gypsy-HOMER3765303 chr5 5737883 5738292 1 LTR MamGyp-int|LTR|Gypsy-HOMER3777666 chr5 13722769 13722924 1 LTR MamGyp-int|LTR|Gypsy-HOMER3777667 chr5 13723161 13723439 1 LTR MamGyp-int|LTR|Gypsy-HOMER3777669 chr5 13723928 13724044 1 LTR MamGyp-int|LTR|Gypsy-HOMER3780350 chr5 15366408 15366500 0 LTR MamGyp-int|LTR|Gypsy-HOMER3780351 chr5 15366701 15366960 0 LTR MamGyp-int|LTR|Gypsy-HOMER3785017 chr5 17956072 17956167 0 LTR MamGyp-int|LTR|Gypsy-HOMER3789415 chr5 20721172 20721356 1 LTR MamGyp-int|LTR|Gypsy-HOMER3789416 chr5 20721506 20721718 1 LTR MamGyp-int|LTR|Gypsy-HOMER3790350 chr5 21269175 21269439 1 LTR MamGyp-int|LTR|Gypsy-HOMER3793015 chr5 22870249 22870531 1 LTR MamGyp-int|LTR|Gypsy-HOMER3794414 chr5 23685423 23685492 0 LTR MamGyp-int|LTR|Gypsy-HOMER3794521 chr5 23756432 23756873 0 LTR MamGyp-int|LTR|Gypsy-HOMER3798484 chr5 26206637 26206917 1 LTR MamGyp-int|LTR|Gypsy-HOMER3812128 chr5 34139799 34140061 0 LTR MamGyp-int|LTR|Gypsy-HOMER3812129 chr5 34140111 34140395 0 LTR MamGyp-int|LTR|Gypsy-HOMER3833462 chr5 50936460 50936679 0 LTR MamGyp-int|LTR|Gypsy-HOMER3839669 chr5 54889975 54890134 0 LTR MamGyp-int|LTR|Gypsy-HOMER3839670 chr5 54890198 54890360 0 LTR MamGyp-int|LTR|Gypsy-HOMER3850150 chr5 60793122 60793773 0 LTR MamGyp-int|LTR|Gypsy-HOMER3850151 chr5 60793827 60793878 0 LTR MamGyp-int|LTR|Gypsy-HOMER3850152 chr5 60794143 60794759 0 LTR MamGyp-int|LTR|Gypsy-HOMER3850153 chr5 60794963 60795035 0 LTR MamGyp-int|LTR|Gypsy-HOMER3877315 chr5 75663836 75664162 1 LTR MamGyp-int|LTR|Gypsy-HOMER3877439 chr5 75738084 75738253 0 LTR MamGyp-int|LTR|Gypsy-HOMER3877443 chr5 75739069 75739292 0 LTR MamGyp-int|LTR|Gypsy-HOMER3896362 chr5 86444082 86444208 1 LTR MamGyp-int|LTR|Gypsy-HOMER3902826 chr5 90767899 90767989 1 LTR MamGyp-int|LTR|Gypsy-HOMER3904231 chr5 91518142 91518347 0 LTR MamGyp-int|LTR|Gypsy-HOMER3904235 chr5 91519770 91519851 0 LTR MamGyp-int|LTR|Gypsy-HOMER3910619 chr5 95838024 95838135 0 LTR MamGyp-int|LTR|Gypsy-HOMER3910620 chr5 95838187 95838666 0 LTR MamGyp-int|LTR|Gypsy-HOMER3926886 chr5 106391456 106391673 0 LTR MamGyp-int|LTR|Gypsy-HOMER3933038 chr5 110409562 110409661 1 LTR MamGyp-int|LTR|Gypsy-HOMER3935686 chr5 112129137 112129516 1 LTR MamGyp-int|LTR|Gypsy-HOMER3936412 chr5 112578865 112579074 1 LTR MamGyp-int|LTR|Gypsy-HOMER3936414 chr5 112579382 112579529 1 LTR MamGyp-int|LTR|Gypsy-HOMER3936415 chr5 112579613 112579705 0 LTR MamGyp-int|LTR|Gypsy-HOMER3936424 chr5 112585772 112585906 0 LTR MamGyp-int|LTR|Gypsy-HOMER3948078 chr5 119628030 119628294 1 LTR MamGyp-int|LTR|Gypsy-HOMER3956857 chr5 125222850 125223169 1 LTR MamGyp-int|LTR|Gypsy-HOMER3965738 chr5 130849680 130850206 1 LTR MamGyp-int|LTR|Gypsy-HOMER3965739 chr5 130850307 130850432 1 LTR MamGyp-int|LTR|Gypsy-HOMER4134730 chr6 30856564 30856869 1 LTR MamGyp-int|LTR|Gypsy-HOMER4174048 chr6 50269641 50269808 1 LTR MamGyp-int|LTR|Gypsy-HOMER4186605 chr6 57890063 57890247 0 LTR MamGyp-int|LTR|Gypsy-HOMER4194057 chr6 64795898 64796055 0 LTR MamGyp-int|LTR|Gypsy-HOMER4194763 chr6 65291883 65292004 0 LTR MamGyp-int|LTR|Gypsy-HOMER4194797 chr6 65312188 65312371 1 LTR MamGyp-int|LTR|Gypsy-HOMER4194799 chr6 65312555 65313165 1 LTR MamGyp-int|LTR|Gypsy-HOMER4194801 chr6 65314469 65314561 1 LTR MamGyp-int|LTR|Gypsy-HOMER4194803 chr6 65314610 65315262 1 LTR MamGyp-int|LTR|Gypsy-HOMER4198954 chr6 68076914 68077501 0 LTR MamGyp-int|LTR|Gypsy-HOMER4201282 chr6 69637805 69638266 0 LTR MamGyp-int|LTR|Gypsy-HOMER4201283 chr6 69638373 69638499 0 LTR MamGyp-int|LTR|Gypsy-HOMER4201286 chr6 69638914 69638989 0 LTR MamGyp-int|LTR|Gypsy-HOMER4201289 chr6 69640191 69640426 0 LTR MamGyp-int|LTR|Gypsy-HOMER4210021 chr6 74880202 74880996 0 LTR MamGyp-int|LTR|Gypsy-HOMER4210023 chr6 74881288 74881617 0 LTR MamGyp-int|LTR|Gypsy-HOMER4232490 chr6 88975197 88975440 1 LTR MamGyp-int|LTR|Gypsy-HOMER4232495 chr6 88976542 88976633 1 LTR MamGyp-int|LTR|Gypsy-HOMER4232509 chr6 88981308 88981419 1 LTR MamGyp-int|LTR|Gypsy-HOMER4239549 chr6 93188910 93189325 1 LTR MamGyp-int|LTR|Gypsy-HOMER4239551 chr6 93189898 93190159 1 LTR MamGyp-int|LTR|Gypsy-HOMER4247233 chr6 98315682 98316164 1 LTR MamGyp-int|LTR|Gypsy-HOMER4252069 chr6 101343408 101343605 1 LTR MamGyp-int|LTR|Gypsy-HOMER4252070 chr6 101343814 101344012 1 LTR MamGyp-int|LTR|Gypsy-HOMER4252071 chr6 101344024 101344828 1 LTR MamGyp-int|LTR|Gypsy-HOMER4272222 chr6 112354629 112354712 1 LTR MamGyp-int|LTR|Gypsy-HOMER4272272 chr6 112391647 112392481 0 LTR MamGyp-int|LTR|Gypsy-HOMER4272944 chr6 112831494 112832227 0 LTR MamGyp-int|LTR|Gypsy-HOMER4276339 chr6 114734905 114735383 0 LTR MamGyp-int|LTR|Gypsy-HOMER4276340 chr6 114735578 114735701 0 LTR MamGyp-int|LTR|Gypsy-HOMER4276407 chr6 114779569 114780803 1 LTR MamGyp-int|LTR|Gypsy-HOMER4277733 chr6 115730317 115730486 1 LTR MamGyp-int|LTR|Gypsy-HOMER4277734 chr6 115730711 115731126 1 LTR MamGyp-int|LTR|Gypsy-HOMER4277736 chr6 115732257 115732665 1 LTR MamGyp-int|LTR|Gypsy-HOMER4284012 chr6 119619630 119619728 0 LTR MamGyp-int|LTR|Gypsy-HOMER4288414 chr6 122393136 122393182 1 LTR MamGyp-int|LTR|Gypsy-HOMER4288416 chr6 122393477 122393587 1 LTR MamGyp-int|LTR|Gypsy-HOMER4288417 chr6 122394362 122394404 1 LTR MamGyp-int|LTR|Gypsy-HOMER4288419 chr6 122394519 122394899 1 LTR MamGyp-int|LTR|Gypsy-HOMER4288997 chr6 122753234 122753486 1 LTR MamGyp-int|LTR|Gypsy-HOMER4304691 chr6 132562245 132562531 0 LTR MamGyp-int|LTR|Gypsy-HOMER4307205 chr6 134072027 134072391 0 LTR MamGyp-int|LTR|Gypsy-HOMER4307207 chr6 134073042 134073547 0 LTR MamGyp-int|LTR|Gypsy-HOMER4309080 chr6 134954131 134954183 0 LTR MamGyp-int|LTR|Gypsy-HOMER4309082 chr6 134954649 134955233 0 LTR MamGyp-int|LTR|Gypsy-HOMER4309083 chr6 134955338 134955642 0 LTR MamGyp-int|LTR|Gypsy-HOMER4324740 chr6 143964545 143965292 0 LTR MamGyp-int|LTR|Gypsy-HOMER4353507 chr6 159873360 159874461 0 LTR MamGyp-int|LTR|Gypsy-HOMER4353508 chr6 159874525 159874821 0 LTR MamGyp-int|LTR|Gypsy-HOMER4353510 chr6 159875199 159875278 0 LTR MamGyp-int|LTR|Gypsy-HOMER4378362 chr6_GL000251v2_alt 2336313 2336618 1 LTR MamGyp-int|LTR|Gypsy-HOMER4395071 chr6_GL000253v2_alt 2166809 2167114 1 LTR MamGyp-int|LTR|Gypsy-HOMER4401945 chr6_GL000254v2_alt 2200719 2201017 1 LTR MamGyp-int|LTR|Gypsy-HOMER4401946 chr6_GL000254v2_alt 2201067 2201142 1 LTR MamGyp-int|LTR|Gypsy-HOMER4410010 chr6_GL000255v2_alt 2111737 2112043 1 LTR MamGyp-int|LTR|Gypsy-HOMER4410011 chr6_GL000255v2_alt 2112085 2112160 1 LTR MamGyp-int|LTR|Gypsy-HOMER4442260 chr7 8105142 8105532 0 LTR MamGyp-int|LTR|Gypsy-HOMER4448462 chr7 12249815 12249877 0 LTR MamGyp-int|LTR|Gypsy-HOMER4449672 chr7 13006766 13007139 1 LTR MamGyp-int|LTR|Gypsy-HOMER4449673 chr7 13007378 13007493 1 LTR MamGyp-int|LTR|Gypsy-HOMER4449675 chr7 13008267 13008433 1 LTR MamGyp-int|LTR|Gypsy-HOMER4452447 chr7 14829795 14829956 0 LTR MamGyp-int|LTR|Gypsy-HOMER4452448 chr7 14830238 14830475 0 LTR MamGyp-int|LTR|Gypsy-HOMER4462256 chr7 21145310 21145552 1 LTR MamGyp-int|LTR|Gypsy-HOMER4462257 chr7 21145553 21145647 1 LTR MamGyp-int|LTR|Gypsy-HOMER4466081 chr7 23221252 23221422 0 LTR MamGyp-int|LTR|Gypsy-HOMER4466084 chr7 23221768 23221979 0 LTR MamGyp-int|LTR|Gypsy-HOMER4466086 chr7 23222345 23222903 0 LTR MamGyp-int|LTR|Gypsy-HOMER4501670 chr7 43028287 43028542 0 LTR MamGyp-int|LTR|Gypsy-HOMER4577002 chr7 85233196 85233518 0 LTR MamGyp-int|LTR|Gypsy-HOMER4577004 chr7 85234141 85234540 0 LTR MamGyp-int|LTR|Gypsy-HOMER4593861 chr7 95729451 95729799 0 LTR MamGyp-int|LTR|Gypsy-HOMER4593864 chr7 95730426 95730568 0 LTR MamGyp-int|LTR|Gypsy-HOMER4593865 chr7 95730628 95730938 0 LTR MamGyp-int|LTR|Gypsy-HOMER4631661 chr7 115788634 115788830 0 LTR MamGyp-int|LTR|Gypsy-HOMER4633980 chr7 117149422 117149591 1 LTR MamGyp-int|LTR|Gypsy-HOMER4633987 chr7 117152676 117153021 1 LTR MamGyp-int|LTR|Gypsy-HOMER4641322 chr7 121810008 121810091 1 LTR MamGyp-int|LTR|Gypsy-HOMER4641359 chr7 121826284 121826371 0 LTR MamGyp-int|LTR|Gypsy-HOMER4665980 chr7 135328902 135328957 0 LTR MamGyp-int|LTR|Gypsy-HOMER4665982 chr7 135329252 135329324 0 LTR MamGyp-int|LTR|Gypsy-HOMER4685387 chr7 145624398 145625150 1 LTR MamGyp-int|LTR|Gypsy-HOMER4699544 chr7 153177298 153177390 1 LTR MamGyp-int|LTR|Gypsy-HOMER4699546 chr7 153177707 153177841 1 LTR MamGyp-int|LTR|Gypsy-HOMER4699621 chr7 153220574 153220719 0 LTR MamGyp-int|LTR|Gypsy-HOMER4699623 chr7 153221157 153221382 0 LTR MamGyp-int|LTR|Gypsy-HOMER4699624 chr7 153221420 153221563 0 LTR MamGyp-int|LTR|Gypsy-HOMER4758237 chr8 26507741 26508856 1 LTR MamGyp-int|LTR|Gypsy-HOMER4785313 chr8 40464539 40464662 0 LTR MamGyp-int|LTR|Gypsy-HOMER4807811 chr8 56132121 56133022 1 LTR MamGyp-int|LTR|Gypsy-HOMER4858121 chr8 85997639 85997942 1 LTR MamGyp-int|LTR|Gypsy-HOMER4860628 chr8 87415500 87415720 1 LTR MamGyp-int|LTR|Gypsy-HOMER4861018 chr8 87688864 87688997 1 LTR MamGyp-int|LTR|Gypsy-HOMER4893491 chr8 105238922 105240145 1 LTR MamGyp-int|LTR|Gypsy-HOMER4893492 chr8 105240176 105241086 1 LTR MamGyp-int|LTR|Gypsy-HOMER4902559 chr8 110673872 110674088 1 LTR MamGyp-int|LTR|Gypsy-HOMER4902569 chr8 110676393 110676648 1 LTR MamGyp-int|LTR|Gypsy-HOMER4902571 chr8 110676953 110677136 1 LTR MamGyp-int|LTR|Gypsy-HOMER4902574 chr8 110677982 110678199 1 LTR MamGyp-int|LTR|Gypsy-HOMER4943274 chr8 131611893 131611984 0 LTR MamGyp-int|LTR|Gypsy-HOMER4943275 chr8 131612270 131612553 0 LTR MamGyp-int|LTR|Gypsy-HOMER4943276 chr8 131612642 131613081 0 LTR MamGyp-int|LTR|Gypsy-HOMER4943278 chr8 131613533 131613663 0 LTR MamGyp-int|LTR|Gypsy-HOMER4943279 chr8 131613815 131614647 0 LTR MamGyp-int|LTR|Gypsy-HOMER4943280 chr8 131615122 131615641 0 LTR MamGyp-int|LTR|Gypsy-HOMER4977836 chr9 1471819 1472156 1 LTR MamGyp-int|LTR|Gypsy-HOMER4980960 chr9 3308405 3308507 0 LTR MamGyp-int|LTR|Gypsy-HOMER4994694 chr9 11435524 11435882 1 LTR MamGyp-int|LTR|Gypsy-HOMER5036304 chr9 35982063 35982171 1 LTR MamGyp-int|LTR|Gypsy-HOMER5036331 chr9 35994277 35994390 1 LTR MamGyp-int|LTR|Gypsy-HOMER5068750 chr9 72532596 72532923 0 LTR MamGyp-int|LTR|Gypsy-HOMER5072588 chr9 74805632 74805715 0 LTR MamGyp-int|LTR|Gypsy-HOMER5077313 chr9 77172284 77172548 1 LTR MamGyp-int|LTR|Gypsy-HOMER5101337 chr9 90450254 90450420 0 LTR MamGyp-int|LTR|Gypsy-HOMER5118975 chr9 99295324 99295494 0 LTR MamGyp-int|LTR|Gypsy-HOMER5130412 chr9 105455448 105455535 1 LTR MamGyp-int|LTR|Gypsy-HOMER5130415 chr9 105456737 105457077 1 LTR MamGyp-int|LTR|Gypsy-HOMER5130418 chr9 105459011 105459383 1 LTR MamGyp-int|LTR|Gypsy-HOMER5130419 chr9 105459738 105459939 1 LTR MamGyp-int|LTR|Gypsy-HOMER5133270 chr9 107067007 107067472 0 LTR MamGyp-int|LTR|Gypsy-HOMER5133271 chr9 107067566 107067660 0 LTR MamGyp-int|LTR|Gypsy-HOMER5133273 chr9 107068088 107068105 0 LTR MamGyp-int|LTR|Gypsy-HOMER5133274 chr9 107068177 107068478 1 LTR MamGyp-int|LTR|Gypsy-HOMER5133298 chr9 107077856 107077987 0 LTR MamGyp-int|LTR|Gypsy-HOMER5133300 chr9 107078235 107078478 0 LTR MamGyp-int|LTR|Gypsy-HOMER5141722 chr9 111051758 111052188 0 LTR MamGyp-int|LTR|Gypsy-HOMER5142267 chr9 111306326 111306506 1 LTR MamGyp-int|LTR|Gypsy-HOMER5142268 chr9 111306694 111307660 1 LTR MamGyp-int|LTR|Gypsy-HOMER5143859 chr9 111992616 111992700 0 LTR MamGyp-int|LTR|Gypsy-HOMER5147631 chr9 113659067 113659149 0 LTR MamGyp-int|LTR|Gypsy-HOMER5177688 chr9 127208725 127208828 0 LTR MamGyp-int|LTR|Gypsy-HOMER5205162 chrUn_KI270742v1 140395 140560 1 LTR MamGyp-int|LTR|Gypsy-HOMER5205264 chrUn_KI270743v1 37698 37856 0 LTR MamGyp-int|LTR|Gypsy-HOMER5207040 chrUn_KI270751v1 103972 104137 1 LTR MamGyp-int|LTR|Gypsy-HOMER5254647 chrX 24027999 24028145 1 LTR MamGyp-int|LTR|Gypsy-HOMER5259934 chrX 26856293 26856457 1 LTR MamGyp-int|LTR|Gypsy-HOMER5259938 chrX 26857509 26857818 1 LTR MamGyp-int|LTR|Gypsy-HOMER5259939 chrX 26857880 26858208 1 LTR MamGyp-int|LTR|Gypsy-HOMER5259941 chrX 26858645 26858827 1 LTR MamGyp-int|LTR|Gypsy-HOMER5260201 chrX 26993867 26994017 1 LTR MamGyp-int|LTR|Gypsy-HOMER5260203 chrX 26994346 26995216 1 LTR MamGyp-int|LTR|Gypsy-HOMER5260204 chrX 26995384 26995483 1 LTR MamGyp-int|LTR|Gypsy-HOMER5260214 chrX 26999354 26999445 1 LTR MamGyp-int|LTR|Gypsy-HOMER5262194 chrX 28112383 28112763 0 LTR MamGyp-int|LTR|Gypsy-HOMER5262195 chrX 28113186 28113274 0 LTR MamGyp-int|LTR|Gypsy-HOMER5270511 chrX 32890074 32890306 0 LTR MamGyp-int|LTR|Gypsy-HOMER5272016 chrX 33859408 33859640 1 LTR MamGyp-int|LTR|Gypsy-HOMER5272776 chrX 34321568 34322038 1 LTR MamGyp-int|LTR|Gypsy-HOMER5272781 chrX 34324738 34324943 1 LTR MamGyp-int|LTR|Gypsy-HOMER5273486 chrX 34769983 34770327 1 LTR MamGyp-int|LTR|Gypsy-HOMER5298949 chrX 47682147 47682289 1 LTR MamGyp-int|LTR|Gypsy-HOMER5311089 chrX 53696188 53696400 1 LTR MamGyp-int|LTR|Gypsy-HOMER5311091 chrX 53696749 53697063 1 LTR MamGyp-int|LTR|Gypsy-HOMER5311129 chrX 53711833 53712006 0 LTR MamGyp-int|LTR|Gypsy-HOMER5311131 chrX 53712323 53712444 0 LTR MamGyp-int|LTR|Gypsy-HOMER5311137 chrX 53714273 53714358 0 LTR MamGyp-int|LTR|Gypsy-HOMER5311139 chrX 53714999 53715279 0 LTR MamGyp-int|LTR|Gypsy-HOMER5311140 chrX 53715537 53716145 0 LTR MamGyp-int|LTR|Gypsy-HOMER5312879 chrX 54362024 54362156 1 LTR MamGyp-int|LTR|Gypsy-HOMER5312881 chrX 54362441 54362603 1 LTR MamGyp-int|LTR|Gypsy-HOMER5326377 chrX 68138083 68138187 0 LTR MamGyp-int|LTR|Gypsy-HOMER5326395 chrX 68147052 68147165 0 LTR MamGyp-int|LTR|Gypsy-HOMER5328026 chrX 68836462 68836528 1 LTR MamGyp-int|LTR|Gypsy-HOMER5329294 chrX 69402546 69404060 1 LTR MamGyp-int|LTR|Gypsy-HOMER5341197 chrX 76151111 76151389 1 LTR MamGyp-int|LTR|Gypsy-HOMER5348227 chrX 81165393 81165706 0 LTR MamGyp-int|LTR|Gypsy-HOMER5348229 chrX 81166190 81166311 0 LTR MamGyp-int|LTR|Gypsy-HOMER5348230 chrX 81166987 81167367 0 LTR MamGyp-int|LTR|Gypsy-HOMER5348234 chrX 81167652 81168531 0 LTR MamGyp-int|LTR|Gypsy-HOMER5354571 chrX 85721456 85721785 1 LTR MamGyp-int|LTR|Gypsy-HOMER5357731 chrX 87942787 87942929 0 LTR MamGyp-int|LTR|Gypsy-HOMER5358819 chrX 88642887 88642935 0 LTR MamGyp-int|LTR|Gypsy-HOMER5358820 chrX 88643233 88644402 0 LTR MamGyp-int|LTR|Gypsy-HOMER5368202 chrX 94891924 94891979 1 LTR MamGyp-int|LTR|Gypsy-HOMER5370577 chrX 96474821 96475390 1 LTR MamGyp-int|LTR|Gypsy-HOMER5380138 chrX 102129350 102129397 1 LTR MamGyp-int|LTR|Gypsy-HOMER5383482 chrX 104113763 104113941 0 LTR MamGyp-int|LTR|Gypsy-HOMER5383483 chrX 104114239 104114773 0 LTR MamGyp-int|LTR|Gypsy-HOMER5386734 chrX 106005703 106005797 0 LTR MamGyp-int|LTR|Gypsy-HOMER5388367 chrX 107029884 107030891 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388369 chrX 107031168 107031199 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388370 chrX 107031277 107032111 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388395 chrX 107041237 107041323 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388398 chrX 107042236 107042613 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388400 chrX 107042972 107043093 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388402 chrX 107043385 107043687 1 LTR MamGyp-int|LTR|Gypsy-HOMER5388428 chrX 107051069 107051271 0 LTR MamGyp-int|LTR|Gypsy-HOMER5392448 chrX 109394078 109395033 1 LTR MamGyp-int|LTR|Gypsy-HOMER5392789 chrX 109579231 109579286 1 LTR MamGyp-int|LTR|Gypsy-HOMER5392813 chrX 109589901 109590419 0 LTR MamGyp-int|LTR|Gypsy-HOMER5395788 chrX 111231352 111231711 1 LTR MamGyp-int|LTR|Gypsy-HOMER5395790 chrX 111232027 111232461 1 LTR MamGyp-int|LTR|Gypsy-HOMER5398524 chrX 112713666 112713845 0 LTR MamGyp-int|LTR|Gypsy-HOMER5402240 chrX 114905242 114905553 1 LTR MamGyp-int|LTR|Gypsy-HOMER5408756 chrX 118824859 118825775 0 LTR MamGyp-int|LTR|Gypsy-HOMER5412971 chrX 120655659 120655878 1 LTR MamGyp-int|LTR|Gypsy-HOMER5412972 chrX 120656095 120656716 1 LTR MamGyp-int|LTR|Gypsy-HOMER5425135 chrX 128058905 128059005 1 LTR MamGyp-int|LTR|Gypsy-HOMER5432844 chrX 132337306 132337601 1 LTR MamGyp-int|LTR|Gypsy-HOMER5439022 chrX 135469115 135469220 0 LTR MamGyp-int|LTR|Gypsy-HOMER5444089 chrX 137881064 137881359 0 LTR MamGyp-int|LTR|Gypsy-HOMER5449193 chrX 140712044 140712176 1 LTR MamGyp-int|LTR|Gypsy-HOMER5449195 chrX 140712502 140712665 1 LTR MamGyp-int|LTR|Gypsy-HOMER5449544 chrX 140908574 140908737 1 LTR MamGyp-int|LTR|Gypsy-HOMER5455006 chrX 143975071 143975357 0 LTR MamGyp-int|LTR|Gypsy-HOMER5455007 chrX 143975637 143975974 0 LTR MamGyp-int|LTR|Gypsy-HOMER5455008 chrX 143976327 143976562 0 LTR MamGyp-int|LTR|Gypsy-HOMER5455012 chrX 143978178 143978317 0 LTR MamGyp-int|LTR|Gypsy-HOMER5455013 chrX 143978335 143978767 0 LTR MamGyp-int|LTR|Gypsy-HOMER5455015 chrX 143979245 143979341 0 LTR MamGyp-int|LTR|Gypsy-HOMER5455016 chrX 143979369 143979744 0 LTR MamGyp-int|LTR|Gypsy-HOMER5456248 chrX 144742826 144742992 0 LTR MamGyp-int|LTR|Gypsy-HOMER5456698 chrX 145007860 145008558 0 LTR MamGyp-int|LTR|Gypsy-HOMER5456699 chrX 145008591 145008765 0 LTR MamGyp-int|LTR|Gypsy-HOMER5458213 chrX 145863646 145863754 1 LTR MamGyp-int|LTR|Gypsy-HOMER5461610 chrX 147743022 147743173 1 LTR MamGyp-int|LTR|Gypsy-HOMER5461611 chrX 147743221 147743437 0 LTR MamGyp-int|LTR|Gypsy-HOMER5461614 chrX 147743882 147744044 0 LTR MamGyp-int|LTR|Gypsy-HOMER5464090 chrX 149276508 149277367 0 LTR MamGyp-int|LTR|Gypsy-HOMER5464094 chrX 149277934 149278012 0 LTR MamGyp-int|LTR|Gypsy-HOMER5464112 chrX 149285863 149286171 0 LTR MamGyp-int|LTR|Gypsy-HOMER5464518 chrX 149522678 149523166 1 LTR MamGyp-int|LTR|Gypsy-HOMER5464781 chrX 149699561 149699669 1 LTR MamGyp-int|LTR|Gypsy-HOMER5470800 chrX 152990781 152991644 1 LTR MamGyp-int|LTR|Gypsy-HOMER5470869 chrX 153028783 153029091 0 LTR MamGyp-int|LTR|Gypsy-HOMER5470900 chrX 153044775 153045098 0 LTR MamGyp-int|LTR|Gypsy-HOMER5470919 chrX 153056997 153058067 0 LTR MamGyp-int|LTR|Gypsy-HOMER5470944 chrX 153073063 153073940 0 LTR MamGyp-int|LTR|Gypsy-HOMER5470945 chrX 153076091 153076968 1 LTR MamGyp-int|LTR|Gypsy-HOMER5471301 chrX 153320380 153320688 1 LTR MamGyp-int|LTR|Gypsy-HOMER5471435 chrX 153397528 153397922 1 LTR MamGyp-int|LTR|Gypsy-HOMER5471436 chrX 153398572 153398851 1 LTR MamGyp-int|LTR|Gypsy-HOMER5522903 chr11_KV766195v1_fix 55116 55214 1 LTR MamGyp-int|LTR|Gypsy-HOMER5551407 chr18_KZ208922v1_fix 90870 91127 1 LTR MamGyp-int|LTR|Gypsy-HOMER5551408 chr18_KZ208922v1_fix 91215 91424 1 LTR MamGyp-int|LTR|Gypsy-HOMER5551409 chr18_KZ208922v1_fix 91625 91747 1 LTR MamGyp-int|LTR|Gypsy-HOMER5551557 chr19_KN196484v1_fix 62875 63096 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564055 chr1_KV880763v1_alt 98003 98187 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564056 chr1_KV880763v1_alt 98258 98872 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564058 chr1_KV880763v1_alt 99005 99632 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564059 chr1_KV880763v1_alt 99898 100038 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564153 chr1_KV880763v1_alt 142314 142487 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564154 chr1_KV880763v1_alt 142673 142778 0 LTR MamGyp-int|LTR|Gypsy-HOMER5564155 chr1_KV880763v1_alt 142849 143109 0 LTR