### /usr/local/bin/dolphin-bin/STAR --runMode genomeGenerate --runThreadN 1 --genomeDir . --genomeFastaFiles GRCz11plus_ensembl.fa --outFileNamePrefix rsem_ref_star --sjdbGTFfile /share/data/umw_biocore/genome_data/zebrafish/GRCz11plus_ensembl/GRCz11plus_ensembl.gtf --sjdbOverhang 100 versionGenome 20201 genomeFastaFiles GRCz11plus_ensembl.fa genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 1 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile /share/data/umw_biocore/genome_data/zebrafish/GRCz11plus_ensembl/GRCz11plus_ensembl.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic